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Loading required package: BiocGenerics
Loading required package: parallel
...
In KernSmooth::bkde2D(x, bandwidth = bandwidth, gridsize = nbin, :
Binning grid too coarse for current (small) bandwidth: consider increasing 'gridsize'
Execution halted
------------------------- Extended error -------------------------
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which, which.max, which.min
Loading required package: BiocParallel
Loading required package: EBImage
Loading required package: S4Vectors
Loading required package: stats4
Attaching package: 'S4Vectors'
The following object is masked from 'package:base':
expand.grid
Loading required package: ProtGenerics
Attaching package: 'ProtGenerics'
The following object is masked from 'package:stats':
smooth
Attaching package: 'Cardinal'
The following object is masked from 'package:stats':
filter
Attaching package: 'ggplot2'
The following object is masked from 'package:Cardinal':
resolution
Attaching package: 'gridExtra'
The following object is masked from 'package:Cardinal':
combine
The following object is masked from 'package:EBImage':
combine
The following object is masked from 'package:BiocGenerics':
combine
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
Warning message:
package 'KernSmooth' was built under R version 3.6.2
`stat_bin()` using `bins = 30`. Pick better value with `binwidth`. [this line in 3 times]
Error in heatmap(mean_matrix) :
'x' must have at least 2 rows and 2 columns
Calls: print -> heatmap
In addition: Warning message:
In KernSmooth::bkde2D(x, bandwidth = bandwidth, gridsize = nbin, :
Binning grid too coarse for current (small) bandwidth: consider increasing 'gridsize'
Execution halted
------------------------------------------------------------------

1

2022-11-24

/data/part0/tmp/jobs/000/245/245765/tool_script.sh: 9: /data/part0/tmp/jobs/000/245/245765/tool_script.sh: Rscript: not found

1

2022-10-28

/data/part0/tmp/jobs/000/245/245763/tool_script.sh: 9: /data/part0/tmp/jobs/000/245/245763/tool_script.sh: Rscript: not found

1

2022-10-28

/data/part0/tmp/jobs/000/245/245758/tool_script.sh: 9: /data/part0/tmp/jobs/000/245/245758/tool_script.sh: Rscript: not found

1

2022-10-28

toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_quality_report/cardinal_quality_report/2.4.0.1 in error's stderr message

Listed in descending order by number of error of each type

Tool error	Number of error like this	Date of this error
Loading required package: BiocGenerics Loading required package: parallel ... In KernSmooth::bkde2D(x, bandwidth = bandwidth, gridsize = nbin, : Binning grid too coarse for current (small) bandwidth: consider increasing 'gridsize' Execution halted ------------------------- Extended error ------------------------- Loading required package: BiocGenerics Loading required package: parallel Attaching package: 'BiocGenerics' The following objects are masked from 'package:parallel': clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport, clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply, parSapply, parSapplyLB The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which, which.max, which.min Loading required package: BiocParallel Loading required package: EBImage Loading required package: S4Vectors Loading required package: stats4 Attaching package: 'S4Vectors' The following object is masked from 'package:base': expand.grid Loading required package: ProtGenerics Attaching package: 'ProtGenerics' The following object is masked from 'package:stats': smooth Attaching package: 'Cardinal' The following object is masked from 'package:stats': filter Attaching package: 'ggplot2' The following object is masked from 'package:Cardinal': resolution Attaching package: 'gridExtra' The following object is masked from 'package:Cardinal': combine The following object is masked from 'package:EBImage': combine The following object is masked from 'package:BiocGenerics': combine KernSmooth 2.23 loaded Copyright M. P. Wand 1997-2009 Warning message: package 'KernSmooth' was built under R version 3.6.2 `stat_bin()` using `bins = 30`. Pick better value with `binwidth`. [this line in 3 times] Error in heatmap(mean_matrix) : 'x' must have at least 2 rows and 2 columns Calls: print -> heatmap In addition: Warning message: In KernSmooth::bkde2D(x, bandwidth = bandwidth, gridsize = nbin, : Binning grid too coarse for current (small) bandwidth: consider increasing 'gridsize' Execution halted ------------------------------------------------------------------	1	2022-11-24
Loading required package: BiocGenerics Loading required package: parallel ... In KernSmooth::bkde2D(x, bandwidth = bandwidth, gridsize = nbin, : Binning grid too coarse for current (small) bandwidth: consider increasing 'gridsize' Execution halted ------------------------- Extended error ------------------------- Loading required package: BiocGenerics Loading required package: parallel Attaching package: 'BiocGenerics' The following objects are masked from 'package:parallel': clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport, clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply, parSapply, parSapplyLB The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which, which.max, which.min Loading required package: BiocParallel Loading required package: EBImage Loading required package: S4Vectors Loading required package: stats4 Attaching package: 'S4Vectors' The following object is masked from 'package:base': expand.grid Loading required package: ProtGenerics Attaching package: 'ProtGenerics' The following object is masked from 'package:stats': smooth Attaching package: 'Cardinal' The following object is masked from 'package:stats': filter Attaching package: 'ggplot2' The following object is masked from 'package:Cardinal': resolution Attaching package: 'gridExtra' The following object is masked from 'package:Cardinal': combine The following object is masked from 'package:EBImage': combine The following object is masked from 'package:BiocGenerics': combine KernSmooth 2.23 loaded Copyright M. P. Wand 1997-2009 Warning message: package 'KernSmooth' was built under R version 3.6.2 Error in sample.int(length(x), size, replace, prob) : cannot take a sample larger than the population when 'replace = FALSE' Calls: sample -> sample.int In addition: Warning message: In KernSmooth::bkde2D(x, bandwidth = bandwidth, gridsize = nbin, : Binning grid too coarse for current (small) bandwidth: consider increasing 'gridsize' Execution halted ------------------------------------------------------------------	1	2022-11-24
/data/part0/tmp/jobs/000/245/245765/tool_script.sh: 9: /data/part0/tmp/jobs/000/245/245765/tool_script.sh: Rscript: not found	1	2022-10-28
/data/part0/tmp/jobs/000/245/245764/tool_script.sh: 9: /data/part0/tmp/jobs/000/245/245764/tool_script.sh: Rscript: not found	1	2022-10-28
/data/part0/tmp/jobs/000/245/245763/tool_script.sh: 9: /data/part0/tmp/jobs/000/245/245763/tool_script.sh: Rscript: not found	1	2022-10-28
/data/part0/tmp/jobs/000/245/245762/tool_script.sh: 9: /data/part0/tmp/jobs/000/245/245762/tool_script.sh: Rscript: not found	1	2022-10-28
/data/part0/tmp/jobs/000/245/245758/tool_script.sh: 9: /data/part0/tmp/jobs/000/245/245758/tool_script.sh: Rscript: not found	1	2022-10-28
[33mWARNING:[0m DEPRECATED USAGE: Environment variable SINGULARITY_TMPDIR will not be supported in the future, use APPTAINER_TMPDIR instead FATAL: Unable to handle docker://quay.io/biocontainers/mulled-v2-2dfb284e80d1e71bb82a6298b977e01b29ba3dc0:57fac147af48a61f34411d36e1b8575ae4751d21-0 uri: while building SIF from layers: packer failed to pack: while unpacking tmpfs: error unpacking rootfs: unpack layer: unpack entry: usr/local/x86_64-conda_cos6-linux-gnu/sysroot/lib/libc-2.12.2.so: unpack to regular file: short write: write /var/tmp/build-temp-3580832074/rootfs/usr/local/x86_64-conda_cos6-linux-gnu/sysroot/lib/libc-2.12.2.so: no space left on device	1	2022-10-25